{"pages":12,"cats":{"rows":"Expected rows","crit":"Criteria","excl":"Penalize","trap":"Traps","ctx":"Context"},"criteria":["Include all antifeedant activity","Include the LC50 from Table 2","Compounds should be described (structure and all)","Include the IC50 and the Ki value(s)","All dose-response values should be in assay instructions","Molecules should include structure for compounds 1 and 2","Descriptions of the S. frugiperda used should line up","Table 1 complete, each fraction explained as EtOAc material"],"notes":[{"id":"overview","cat":"ctx","crit":[],"title":"What a perfect extraction contains","body":"<p><b>23 rows</b>: 9 dose_response (4 LC50 from Table 2, 3 AChE IC50 from Table 3, 2 Ki from §3.6) and 14 time_response (3 antifeedant rates from §3.1, 11 fraction mortalities from Table 1). Every compound potency and ladder is in µg/mL.</p><p>The abstract and conclusion restate the same values; they are not extra rows.</p>","page":1,"rects":[[36.78,39.33,92.21,75.21]]},{"id":"intro-stats","cat":"excl","crit":[],"title":"Introduction figures are not rows","body":"<p>46 countries, 617 counties in 16 provinces, 126,700 ha, and the >170 known compounds are background. Emitting any of them as a row is over-extraction.</p>","page":2,"rects":[[28.29,23.33,36.49,24.76],[29.45,30.75,37.7,32.18],[29.81,32.24,40.61,33.67],[88.2,12.53,92.03,13.96]]},{"id":"isolation","cat":"crit","crit":[3,8],"title":"Isolation route and the Lx fractions","body":"<p>EtOAc layer (372 g) → silica gel column 10 × 100 cm, PE–EtOAc 50:1 → pure EtOAc → <b>Lx.1–Lx.12</b>, the Table 1 fractions (mixtures, not pure compounds).</p><p>Lx.9 (18.9 g) → MCI → Lx.9G (800 mg) → silica → Lx.9G3 (200 mg) → gel column → prep HPLC (37% CH3CN, 0.1% FA) → <b>1</b>: 117 mg, tR 15 min; <b>2</b>: 71 mg, tR 37 min.</p><p>Layer masses (PE 253 g, EtOAc 372 g, n-BuOH 324 g) belong in descriptions, never as rows. Only Lx.9 has a stated mass; invented per-fraction eluent ratios or masses are penalized.</p>","page":3,"rects":[[7.89,56.55,49.38,88.4],[50.72,9.39,92.21,26.02]]},{"id":"plant","cat":"crit","crit":[3],"title":"Provenance for compounds and extracts","body":"<p>Collected July 2022 at Anyang, Henan (35°12′N, 113°37′E), sample No. 2022017, identified by Dr Guoxing Wu. This belongs in the descriptions of compounds 1 and 2 and of the extracts and fractions, never as rows.</p><p>The paper says only that the collected plant was dried and pulverized, so “whole plant” is a minor embellishment.</p>","page":3,"rects":[[7.89,23.88,49.38,33.51]]},{"id":"antifeedant-method","cat":"crit","crit":[1],"title":"Antifeedant assay instructions","body":"<p>Leaf-disc method (Tang and Wang 2007), extracts at <b>10 mg/mL</b> (genuinely mg: do not convert), acetone control, discs d = 1.2 cm soaked 3 s, replaced once more than 80% is eaten, dishes at 25–30 °C, area eaten measured on grid paper, the rate formula, and the row's time point. <code>n_samples</code> = 3.</p><p>A 48 h reading is scheduled but never reported, so any 48 h row is penalized. The leaf species isn't stated; “corn leaf discs” is a minor embellishment.</p>","page":3,"rects":[[50.72,28.4,92.21,56.91]]},{"id":"rearing","cat":"crit","crit":[7],"title":"Larva description, used everywhere","body":"<p>Every <i>S. frugiperda</i> ref (antifeedant, Table 1, both LC50 routes, and the AChE source) should say: reared for multiple generations on <b>corn leaves</b> at the Insect Toxicology Laboratory, Yunnan Agricultural University; <b>26 °C, 60% RH, 14 h:10 h</b>; <b>4th-instar</b> larvae. The duplicated paragraph is not a conflict, and no strain or field origin is given.</p><p>Facts only in shared_instructions with bare target descriptions: partial. A different instar, artificial-diet rearing, a field population, or the 25–30 °C / 37 °C assay temperatures given as rearing conditions: error.</p>","page":3,"rects":[[7.89,35.76,49.38,54.3]]},{"id":"dietary-method","cat":"crit","crit":[2,5],"title":"Dietary (“gastrotoxic”) route","body":"<p>Artificial-feed film: 0.1 mL acetone solution spread on 1 g feed and dried in the shade, one 4th-instar larva per dish, 10 dishes, experiment run <b>twice</b> → <code>n_samples</code> = 2 on dietary LC50 rows (not 20). Solvent and blank controls.</p><p>The 200 µg/mL screen of Figure 3A is plot-only: no rows.</p>","page":3,"rects":[[50.72,59.76,92.21,88.4]]},{"id":"invivo-ache","cat":"excl","crit":[4],"title":"In-vivo AChE assay (Figure 5A)","body":"<p>Fixed LC50 and 2×LC50 doses, plotted only: no rows. The “five replicates” belong to this assay, so <code>n_samples</code> = 5 on the in-vitro IC50 rows is wrong.</p>","page":4,"rects":[[50.72,9.39,92.21,26.26]]},{"id":"contact-method","cat":"crit","crit":[2,5],"title":"Contact (“poisoning”) route","body":"<p>Immersion for 3–4 s, 10 dishes with one larva each, run <b>three times</b> → <code>n_samples</code> = 3 on contact LC50 rows (not 30). Solvent and blank controls. Swapping the two routes in Table 2 is an error.</p>","page":4,"rects":[[7.89,16.4,49.38,40.28]]},{"id":"ic50-method","cat":"crit","crit":[4,5],"title":"IC50 instructions and the AChE target","body":"<p>Target: <code>protein</code> “acetylcholinesterase”, organism <i>S. frugiperda</i>, described as the crude supernatant of ~0.1 g 4th-instar larvae homogenized in 1 mL buffer (ice bath 5 min; 10,000 rpm, 4 °C, 10 min). A generic “larval homogenate” is a partial.</p><p>Instructions: 4 µL compound + 96 µL enzyme, final <b>3.75, 7.5, 15, 30, 60 µg/mL</b>, 37 °C for 2 h; 50 µL 1.5 mM acetylcholine for 5 min; 50 µL 0.3 mM DTNB; read at 412 nm; inhibition = (OD<sub>c</sub> − OD<sub>t</sub>)/OD<sub>c</sub> × 100.</p><p>Chlorpyrifos is the positive control in acetone (“five concentration gradients”). The substrate is acetylcholine, not acetylthiocholine.</p>","page":4,"rects":[[50.72,29.11,92.21,67.13]]},{"id":"lc50-ladder","cat":"crit","crit":[5],"title":"LC50 ladder and endpoint","body":"<p>Ladder <b>50, 100, 200, 400, 800 µg/mL</b>; dead larvae counted at <b>72 h</b>; corrected (Abbott-type) mortality; Excel + SPSS 20.0 probit regression gives the LC50. This belongs in each LC50 row's instructions, with no LC50 value leaking into them.</p><p>Units must be µg/mL: writing the ladder as 50–800 mg/mL is a heavy 1000× error.</p>","page":4,"rects":[[7.89,42.18,49.38,71.17]]},{"id":"reversibility","cat":"crit","crit":[5],"title":"Reversibility series (context for Ki)","body":"<p>Enzyme at 0.125, 0.25, 0.5, 1.0 U/mL with inhibitor at 3.75–60 µg/mL, then 1.5 mM ACh + 0.3 mM DTNB. Worth carrying in the Ki instructions.</p><p>Figure 6A–B plots 0.2–0.8 U/mL instead; prefer the methods text, and flagging the mismatch is good.</p>","page":4,"rects":[[50.72,70.34,92.21,88.75]]},{"id":"lc90-symptoms","cat":"excl","crit":[],"title":"Symptoms and the LC90 dose","body":"<p>The LC90 used here is never printed, so an invented LC90 is a hallucination. The Figure 4 symptom stages are qualitative: no rows.</p>","page":4,"rects":[[7.89,73.31,49.38,88.75]]},{"id":"ki-method","cat":"crit","crit":[4,5],"title":"Ki instructions","body":"<p>Fixed enzyme; inhibitor at 3.75–60 µg/mL (100 µL, 37 °C, 1 h, acetone control); then 50 µL 0.3 mM DTNB + ACh at <b>0.325, 0.75, 1.5, 3, 6 mM</b> (keep 0.325 as printed); OD at 412 nm after 60 s gives ΔA/min.</p><p>Lineweaver–Burk gives the inhibition type; the Dixon plot (Figure 6E/F, ACh 3 and 6 mM) gives Ki.</p>","page":5,"rects":[[7.89,9.15,49.38,40.87]]},{"id":"figure1","cat":"excl","crit":[1],"title":"Figure 1: bars without numbers","body":"<p>The n-BuOH bars and the absolute EtOAc 24 h bar carry no printed values. Leaving them out is correct; eyeballed values (e.g. n-BuOH “~28%”) or an invented 0 are hallucinations. The Duncan letters may go in result_text.</p>","page":5,"rects":[[52.57,10.57,90.19,40.28]]},{"id":"antifeedant-values","cat":"rows","crit":[1],"title":"Antifeedant rows (3)","body":"<div class=\"tbl\"><table><thead><tr><th>extract</th><th>time</th><th>%</th><th>Duncan</th></tr></thead><tbody><tr><td>PE layer</td><td>8 h</td><td class=\"n\">61.14</td><td>a</td></tr><tr><td>PE layer</td><td>24 h</td><td class=\"n\">48.56</td><td>a</td></tr><tr><td>EtOAc layer</td><td>8 h</td><td class=\"n\">24.91</td><td>b</td></tr></tbody></table></div><p><code>antifeedant_percentage</code>, unit %, <code>n_samples</code> 3. Effector: a generic crude-extract ref per layer, never the solvent molecule. Either time framing is fine (8 / 24 h or 0–8 / 8–24 h).</p><p>The EtOAc <b>+16.65 points from 8 h to 24 h</b> must appear somewhere: in result_text, as its own change row, or as a 41.56% row marked as derived. Reporting 16.65 as the EtOAc 24 h rate is an error.</p>","page":5,"rects":[[36.13,86.02,41.24,87.45],[74.64,42.98,79.93,44.41],[54.05,47.43,59.09,48.86],[87,47.43,92.03,48.86]]},{"id":"table1","cat":"rows","crit":[8],"title":"Table 1 rows (11)","body":"<div class=\"tbl\"><table><thead><tr><th>fraction</th><th>mortality %</th><th>Duncan</th></tr></thead><tbody><tr><td>Lx.2</td><td class=\"n\">17.57</td><td>g</td></tr><tr><td>Lx.3</td><td class=\"n\">10.37</td><td>h</td></tr><tr><td>Lx.4</td><td class=\"n\">22.54</td><td>f</td></tr><tr><td>Lx.5</td><td class=\"n\">32.11</td><td>d</td></tr><tr><td>Lx.6</td><td class=\"n\">29.68</td><td>e</td></tr><tr><td>Lx.7</td><td class=\"n\">36.28</td><td>c</td></tr><tr><td>Lx.8</td><td class=\"n\">41.73</td><td>b</td></tr><tr><td>Lx.9</td><td class=\"n\">53.76</td><td>a</td></tr><tr><td>Lx.10</td><td class=\"n\">39.25</td><td>b</td></tr><tr><td>Lx.11</td><td class=\"n\">27.14</td><td>e</td></tr><tr><td>Lx.12</td><td class=\"n\">15.93</td><td>g</td></tr></tbody></table></div><p>time_response, <code>mortality_percentage</code> %, diet film at 2 mg/mL. Evaluation time and replicates aren't stated, so <code>n_samples</code> is null (asserting 72 h or 2 is minor). Each fraction is a generic effector described as a silica-gel gradient fraction of the EtOAc layer.</p><p>Lx.1 is printed “–”: omit it with a note, or a 0 row that explains the dash. Lx.11 prints as “27.14.e”. Lx.8 is 41.73% although the text says the others “did not exceed 40%”. Errors: dose_response, an “ethyl acetate” effector, a nonzero Lx.1.</p>","page":6,"rects":[[7.89,9.15,47.87,40.28],[13.99,42.87,27.48,44.3]]},{"id":"compounds","cat":"crit","crit":[3,6],"title":"Compound identities","body":"<p><b>1</b> N-p-coumaroyl tyramine, white non-crystalline powder, ESI-MS <b>283.3624 [M+]</b>. <b>2</b> N-trans-feruloyl tyramine, <b>314.1387 [M+H]+</b>.</p><p>Diagnostic NMR: trans olefin J 15.7–15.8 Hz; ethylene triplets δH 3.45 / 2.74; amide C=O δC 169.24 / 169.17; the OCH3 of 2 at δH 3.86, δC 55.36. Full peak lists are welcome but not required; transcribe as printed (1 lists 7.43 twice).</p><p>NMR shifts as physicochemical rows are minor over-extraction; tR and m/z rows are tolerated.</p>","page":6,"rects":[[7.89,51.56,49.38,70.1],[50.72,9.39,92.21,31.96]]},{"id":"route-screen","cat":"ctx","crit":[2],"title":"Which route is which","body":"<p>§3.3 calls 47.97 µg/mL the contact LC50, which confirms Table 2's mapping: “gastrotoxic” = dietary, “poisoning” = contact. The 200 µg/mL single-dose screen (Figures 3A–B) is plot-only: no rows.</p>","page":6,"rects":[[50.72,34.34,92.21,70.81]]},{"id":"figure2","cat":"crit","crit":[6],"title":"Structures: what counts as a pass","body":"<p>No SMILES, InChI or CAS is printed. A structure-denoting name in <code>iupac_name</code> (or <code>name</code>) plus a description of this drawing passes, and a null SMILES is correct.</p><p>A SMILES is fine only if it encodes the drawing exactly: trans C=C conjugated to the amide C=O, para-OH on both rings, a plain –CH2–CH2– linker, and for 2 a methoxy ortho to the cinnamoyl OH. Any wrong feature is heavy.</p><p>The figure labels 1 “N-p-Coumaroyloctopamine”, but the drawing has no side-chain OH and the text says tyramine. “Octopamine” is an error; flagging the conflict is good.</p>","page":6,"rects":[[9.57,73.54,86.5,90.77]]},{"id":"figure3","cat":"excl","crit":[],"title":"Figure 3: plot-only","body":"<p>24/48/72 h mortality at 200 µg/mL (A–B) and mortality at each dose (C–D) have no printed numbers. Digitized values are hallucinations.</p>","page":7,"rects":[[9.57,10.57,87.84,49.9]]},{"id":"methoxy-c3","cat":"trap","crit":[3,6],"title":"Methoxy position","body":"<p>The extra methoxy of 2 is at C-3′ (here, the NMR at δC 149.27, and Figure 2). §3.6 later says “C-6”; that is a misprint.</p>","page":7,"rects":[[8,57.83,19.97,59.33]]},{"id":"table2","cat":"rows","crit":[2],"title":"Table 2 rows (4 LC50s)","body":"<div class=\"tbl\"><table><thead><tr><th>route</th><th>cpd</th><th>µg/mL</th><th>result_text</th></tr></thead><tbody><tr><td>dietary</td><td>1</td><td class=\"n\">305.25</td><td class=\"eq\">y = 46.962x − 66.683, R² 0.9888</td></tr><tr><td>dietary</td><td>2</td><td class=\"n\">89.88</td><td class=\"eq\">y = 44.673x − 37.275, R² 0.975</td></tr><tr><td>contact</td><td>1</td><td class=\"n\">92.96</td><td class=\"eq\">y = 45.083x − 38.738, R² 0.9972</td></tr><tr><td>contact</td><td>2</td><td class=\"n\">47.97</td><td class=\"eq\">y = 39.153x − 15.807, R² 0.9829</td></tr></tbody></table></div><p><code>unit=\"ug/mL\"</code>; mg/mL is a heavy 1000× error. “Gastrotoxic” = dietary, “poisoning” = contact. Equation and R² go in result_text, with no invented CI. <code>n_samples</code> 2 dietary, 3 contact. Target: organism <i>S. frugiperda</i>.</p><p>Check: setting y = 50 reproduces each LC50 (10^(116.683/46.962) ≈ 305.2).</p>","page":7,"rects":[[7.89,76.87,86.5,89.35]]},{"id":"figure4","cat":"excl","crit":[],"title":"Figure 4: qualitative","body":"<p>Excitement, spasm, paralysis, death. No rows.</p>","page":8,"rects":[[9.57,10.57,86.5,42.89]]},{"id":"figure5","cat":"excl","crit":[4],"title":"Figure 5: plot-only","body":"<p>5A shows in-vivo AChE activity (U/g) at LC50 and 2×LC50; 5B shows % inhibition per concentration. No printed numbers, so no rows; the IC50s come from Table 3.</p>","page":8,"rects":[[9.57,66.18,90.19,90.77]]},{"id":"table3","cat":"rows","crit":[4],"title":"Table 3 rows (3 IC50s)","body":"<div class=\"tbl\"><table><thead><tr><th>cpd</th><th>µg/mL</th><th>±</th><th>Duncan</th><th></th></tr></thead><tbody><tr><td>1</td><td class=\"n\">23.34</td><td class=\"n\">2.72</td><td>c</td><td class=\"eq\">R² 0.9834</td></tr><tr><td>2</td><td class=\"n\">19.71</td><td class=\"n\">1.98</td><td>b</td><td class=\"eq\">R² 0.9692</td></tr><tr><td>chlorpyrifos</td><td class=\"n\">2.57</td><td class=\"n\">0.37</td><td>a</td><td class=\"eq\">R² 0.9763</td></tr></tbody></table></div><p>Unit ug/mL. ± → <code>uncertainty_value</code>; the paper doesn't say SD or SE, so <code>uncertainty_type</code> is null (asserting SD is minor). <code>n_samples</code> null. The chlorpyrifos row is expected; omitting it is a minor miss.</p><p>The caption copies Table 2's (“two modes of action”), but this table is the in-vitro AChE IC50.</p>","page":9,"rects":[[7.89,9.15,44.51,21.27]]},{"id":"figure6","cat":"excl","crit":[4],"title":"Figure 6: kinetics plots only","body":"<p>No Km, Vmax, rate or intercept is printed, so michaelis_menten stays empty and nothing here becomes a row. The 1/S axis reads µM⁻¹ although the ACh ladder is in mM; prefer the methods.</p>","page":9,"rects":[[9.57,24.59,87.17,87.09]]},{"id":"ic50-restated","cat":"ctx","crit":[4],"title":"IC50s restated","body":"<p>The same three Table 3 values, not extra rows. Figure 5B is plot-only.</p>","page":10,"rects":[[7.89,9.39,49.38,36.48]]},{"id":"ki-values","cat":"rows","crit":[4],"title":"Ki rows (2)","body":"<div class=\"tbl\"><table><thead><tr><th>cpd</th><th>Ki, µg/mL</th></tr></thead><tbody><tr><td>1</td><td class=\"n\">23.76</td></tr><tr><td>2</td><td class=\"n\">20.79</td></tr></tbody></table></div><p>dose_response with <code>value_type=\"Ki\"</code>, no uncertainty, never michaelis_menten or binding_affinity. result_text may say reversible and competitive (Km rises, Vmax unchanged); those stay qualitative.</p><p>Ki and IC50 nearly coincide (1: 23.76 vs 23.34; 2: 20.79 vs 19.71), so swapping metric or compound is an error. “C-6” in this paragraph is a misprint for C-3′.</p>","page":10,"rects":[[22.42,85.31,35.8,86.73],[80.94,15.5,84.64,16.93],[72.64,16.99,76.35,18.42],[78.64,22.93,92.02,24.36]]},{"id":"conclusion","cat":"ctx","crit":[],"title":"Conclusion restates","body":"<p>LC50 47.97, IC50 19.71 ± 1.98 and the two Ki values again: the same rows, not new ones.</p>","page":10,"rects":[[50.72,29.7,92.21,63.21]]},{"id":"supplement","cat":"ctx","crit":[],"title":"source_flags","body":"<p>The paper points to online Supplementary Material that isn't in the PDF, so <code>has_missing_supplemental_files</code> = true. No specific Table S or Figure S is cited, so false is only a minor miss.</p>","page":11,"rects":[[50.72,42.06,92.21,50.26]]}]}